Serialized Form
Package org.jmol.adapter.smarter |
atomSetIndex
int atomSetIndex
atomIndex
int atomIndex
bsSymmetry
java.util.BitSet bsSymmetry
atomSite
int atomSite
elementSymbol
java.lang.String elementSymbol
elementNumber
short elementNumber
atomName
java.lang.String atomName
formalCharge
int formalCharge
partialCharge
float partialCharge
vectorX
float vectorX
vectorY
float vectorY
vectorZ
float vectorZ
bfactor
float bfactor
occupancy
int occupancy
radius
float radius
isHetero
boolean isHetero
atomSerial
int atomSerial
chainID
char chainID
alternateLocationID
char alternateLocationID
group3
java.lang.String group3
sequenceNumber
int sequenceNumber
insertionCode
char insertionCode
anisoBorU
float[] anisoBorU
ellipsoid
java.lang.Object[] ellipsoid
Package org.jmol.appletwrapper |
wrappedAppletClassName
java.lang.String wrappedAppletClassName
preloadImageName
java.lang.String preloadImageName
preloadTextMessage
java.lang.String preloadTextMessage
preloadThreadCount
int preloadThreadCount
preloadClassNames
java.lang.String[] preloadClassNames
preloadClassIndex
int preloadClassIndex
previousClassName
java.lang.String previousClassName
needToCompleteInitialization
boolean needToCompleteInitialization
preloadImageReadyForDisplay
boolean preloadImageReadyForDisplay
preloadImagePainted
boolean preloadImagePainted
preloadImage
java.awt.Image preloadImage
mediaTracker
java.awt.MediaTracker mediaTracker
bgcolor
java.awt.Color bgcolor
textColor
java.awt.Color textColor
wrappedApplet
WrappedApplet wrappedApplet
startTime
long startTime
clockX
int clockX
clockBaseline
int clockBaseline
clockWidth
int clockWidth
fontSize
int fontSize
font
java.awt.Font font
fontMetrics
java.awt.FontMetrics fontMetrics
fontAscent
int fontAscent
fontHeight
int fontHeight
isSigned
boolean isSigned
input
javax.swing.JTextArea input
output
javax.swing.JTextPane output
outputDocument
javax.swing.text.Document outputDocument
jf
javax.swing.JFrame jf
attributesCommand
javax.swing.text.SimpleAttributeSet attributesCommand
menubar
javax.swing.JMenuBar menubar
clearOutButton
javax.swing.JButton clearOutButton
clearInButton
javax.swing.JButton clearInButton
loadButton
javax.swing.JButton loadButton
map
java.util.Hashtable<K,V> map
labels
java.util.Hashtable<K,V> labels
viewer
JmolViewer viewer
display
java.awt.Component display
scriptEditor
ScriptEditor scriptEditor
editButton
javax.swing.JButton editButton
runButton
javax.swing.JButton runButton
historyButton
javax.swing.JButton historyButton
stateButton
javax.swing.JButton stateButton
editor
ScriptEditor.EditorTextPane editor
openButton
javax.swing.JButton openButton
closeButton
javax.swing.JButton closeButton
loadButton
javax.swing.JButton loadButton
topButton
javax.swing.JButton topButton
checkButton
javax.swing.JButton checkButton
runButton
javax.swing.JButton runButton
pauseButton
javax.swing.JButton pauseButton
haltButton
javax.swing.JButton haltButton
clearButton
javax.swing.JButton clearButton
stateButton
javax.swing.JButton stateButton
consoleButton
javax.swing.JButton consoleButton
stepButton
javax.swing.JButton stepButton
resumeButton
javax.swing.JButton resumeButton
viewer
JmolViewer viewer
jmolConsole
JmolConsole jmolConsole
title
java.lang.String title
parsedData
java.lang.String parsedData
parsedContext
ScriptContext parsedContext
attHighlight
javax.swing.text.SimpleAttributeSet attHighlight
attEcho
javax.swing.text.SimpleAttributeSet attEcho
attError
javax.swing.text.SimpleAttributeSet attError
buttonPanel
javax.swing.JPanel buttonPanel
filename
java.lang.String filename
Package org.jmol.export.dialog |
extensions
java.lang.String[] extensions
choice
java.lang.String choice
extension
java.lang.String extension
qSliderJPEG
javax.swing.JSlider qSliderJPEG
qSliderPNG
javax.swing.JSlider qSliderPNG
cb
javax.swing.JComboBox cb
qPanelJPEG
javax.swing.JPanel qPanelJPEG
qPanelPNG
javax.swing.JPanel qPanelPNG
openPreview
FilePreview openPreview
initialFile
java.io.File initialFile
dialogLocation
java.awt.Point dialogLocation
dialogSize
java.awt.Dimension dialogSize
dialog
javax.swing.JDialog dialog
active
javax.swing.JCheckBox active
append
javax.swing.JCheckBox append
chooser
javax.swing.JFileChooser chooser
display
FilePreview.FPPanel display
Ok
java.awt.Button Ok
Annuler
java.awt.Button Annuler
Saisie
java.awt.TextField Saisie
OkStatus
boolean OkStatus
fin
boolean fin
My_ZoneVisu
ZoneVisu My_ZoneVisu
My_Thread
java.lang.Thread My_Thread
_graphDataUtils
GraphCharacteristics _graphDataUtils
texte
java.util.Vector<E> texte
nbLignes
int nbLignes
shitty_starting_constant
int shitty_starting_constant
Firstx
double Firstx
Lastx
double Lastx
YFactor
double YFactor
Nbpoints
int Nbpoints
nmr_observe_frequency
double nmr_observe_frequency
TexteTitre
java.lang.String TexteTitre
x_units
java.lang.String x_units
y_units
java.lang.String y_units
Datatype
java.lang.String Datatype
Load_File
java.awt.Button Load_File
Zoom_In
java.awt.Button Zoom_In
Zoom_Back
java.awt.Button Zoom_Back
Zoom_Out
java.awt.Button Zoom_Out
Reverse
java.awt.Checkbox Reverse
Grid
java.awt.Checkbox Grid
Integrate
java.awt.Checkbox Integrate
Find_Peak
java.awt.Button Find_Peak
JCamp
java.awt.Button JCamp
Fenetre_Load_File
java.awt.Frame Fenetre_Load_File
Dialogue_Load_File
SaisieDlg Dialogue_Load_File
contexte
java.applet.AppletContext contexte
clickable_peaks_frame_name
java.lang.String clickable_peaks_frame_name
Flag_Zoomin
boolean Flag_Zoomin
Flag_Zoomback
boolean Flag_Zoomback
Flag_Zoomout
boolean Flag_Zoomout
Flag_Reverse
boolean Flag_Reverse
Flag_Integrate
boolean Flag_Integrate
Flag_Dialogue_File_Enabled
boolean Flag_Dialogue_File_Enabled
Flag_Redraw
boolean Flag_Redraw
Flag_Find_Peak
boolean Flag_Find_Peak
Flag_Write_JCamp
boolean Flag_Write_JCamp
isActive
boolean isActive
hasPrivilege
boolean hasPrivilege
inNavigator
boolean inNavigator
inExplorer
boolean inExplorer
openDialog
java.awt.FileDialog openDialog
saveDialog
java.awt.FileDialog saveDialog
Current_Error
java.lang.String Current_Error
_graphDataUtils
GraphCharacteristics _graphDataUtils
Firstx
double Firstx
Lastx
double Lastx
Miny
double Miny
Maxy
double Maxy
YFactor
double YFactor
xLowerLimit
int xLowerLimit
xUpperLimit
int xUpperLimit
nbLignes
int nbLignes
Nbpoints
int Nbpoints
TexteTitre
java.lang.String TexteTitre
x_units
java.lang.String x_units
y_units
java.lang.String y_units
typedata
int typedata
reverse
boolean reverse
RealFirstx
double RealFirstx
RealLastx
double RealLastx
Last_RealFirstx
double Last_RealFirstx
Last_RealLastx
double Last_RealLastx
Last_Firstx
double Last_Firstx
Last_Lastx
double Last_Lastx
Sav_Firstx
double Sav_Firstx
Sav_Lastx
double Sav_Lastx
Flag_Clickable_Peaks
boolean Flag_Clickable_Peaks
Nb_Clickable_Peaks
int Nb_Clickable_Peaks
Peak_Start
double[] Peak_Start
Peak_Stop
double[] Peak_Stop
Peak_Html
java.lang.String[] Peak_Html
Flag_Load_Now_Html
boolean Flag_Load_Now_Html
Name_Load_Now_Html
java.lang.String Name_Load_Now_Html
Sav_Nbpoints_a_tracer
int Sav_Nbpoints_a_tracer
Nbpoints_a_tracer
int Nbpoints_a_tracer
prempoint
int prempoint
Y_Values
java.lang.String Y_Values
ShowTitle
java.lang.String ShowTitle
shitty_starting_constant
int shitty_starting_constant
tableau_points
double[] tableau_points
tableau_integrate
double[] tableau_integrate
Incrx
double Incrx
Multx
double Multx
Multy
double Multy
Maxintegrate
double Maxintegrate
x
double x
y
double y
ax
double ax
ay
double ay
xd
double xd
xf
double xf
largeur
int largeur
hauteur
int hauteur
largeur_gfx
int largeur_gfx
hauteur_gfx
int hauteur_gfx
decalx_gfx
int decalx_gfx
decaly_gfx
int decaly_gfx
hauteur_bandeau
int hauteur_bandeau
Flag_Grid
boolean Flag_Grid
Flag_Reverse
boolean Flag_Reverse
Flag_Integrate
boolean Flag_Integrate
location_textetitre
int location_textetitre
BufImg
java.awt.Image BufImg
BufGra
java.awt.Graphics BufGra
SavBufImg
java.awt.Image SavBufImg
SavBufGra
java.awt.Graphics SavBufGra
ZoomBufImg
java.awt.Image ZoomBufImg
ZoomBufGra
java.awt.Graphics ZoomBufGra
x1_zoom
int x1_zoom
x2_zoom
int x2_zoom
indice
int indice
Un_Nombre
java.lang.String Un_Nombre
Package org.jmol.modelset |
group
Group group
atomIndex
int atomIndex
atomSymmetry
java.util.BitSet atomSymmetry
atomSite
int atomSite
userDefinedVanDerWaalRadius
float userDefinedVanDerWaalRadius
atomicAndIsotopeNumber
short atomicAndIsotopeNumber
formalChargeAndFlags
byte formalChargeAndFlags
valence
byte valence
alternateLocationID
char alternateLocationID
madAtom
short madAtom
colixAtom
short colixAtom
paletteID
byte paletteID
bonds
Bond[] bonds
nBondsDisplayed
int nBondsDisplayed
nBackbonesDisplayed
int nBackbonesDisplayed
clickabilityFlags
int clickabilityFlags
shapeVisibilityFlags
int shapeVisibilityFlags
isSimple
boolean isSimple
associatedAtoms
int[] associatedAtoms
outStream
java.io.BufferedOutputStream outStream
JpegObj
JpegInfo JpegObj
Huf
Huffman Huf
dct
DCT dct
Quality
int Quality
screenX
int screenX
screenY
int screenY
screenZ
int screenZ
screenDiameter
short screenDiameter
modelIndex
short modelIndex
Package org.openscience.jmol.app |
Package org.openscience.jmol.app.jmolpanel |
html
javax.swing.JEditorPane html
console
AppConsole.ConsoleTextPane console
varButton
javax.swing.JButton varButton
haltButton
javax.swing.JButton haltButton
closeButton
javax.swing.JButton closeButton
clearButton
javax.swing.JButton clearButton
questButton
javax.swing.JButton questButton
helpButton
javax.swing.JButton helpButton
undoButton
javax.swing.JButton undoButton
redoButton
javax.swing.JButton redoButton
checkButton
javax.swing.JButton checkButton
stepButton
javax.swing.JButton stepButton
topButton
javax.swing.JButton topButton
buttonPanel
javax.swing.JPanel buttonPanel
isError
boolean isError
execThread
AppConsole.ExecuteCommandThread execThread
undoStack
java.lang.String[] undoStack
undoPointer
int undoPointer
undoSaved
boolean undoSaved
animThread
java.lang.Thread animThread
propertiesTextArea
javax.swing.JTextArea propertiesTextArea
tree
javax.swing.JTree tree
treeModel
javax.swing.tree.DefaultTreeModel treeModel
viewer
JmolViewer viewer
repeatCheckBox
javax.swing.JCheckBox repeatCheckBox
selectSlider
javax.swing.JSlider selectSlider
infoLabel
javax.swing.JLabel infoLabel
fpsSlider
javax.swing.JSlider fpsSlider
amplitudeSlider
javax.swing.JSlider amplitudeSlider
periodSlider
javax.swing.JSlider periodSlider
scaleSlider
javax.swing.JSlider scaleSlider
radiusSlider
javax.swing.JSlider radiusSlider
saveChooser
javax.swing.JFileChooser saveChooser
indexes
int[] indexes
- Sequence of atom set indexes in current tree selection for a branch,
or siblings for a leaf.
currentIndex
int currentIndex
status
StatusBar status
guimap
GuiMap guimap
viewer
JmolViewer viewer
displaySpeed
java.lang.String displaySpeed
startupDimension
java.awt.Dimension startupDimension
haveDisplay
boolean haveDisplay
border
java.awt.Point border
haveBorder
boolean haveBorder
frame
javax.swing.JFrame frame
showPaintTime
boolean showPaintTime
dimSize
java.awt.Dimension dimSize
rectClip
java.awt.Rectangle rectClip
buttonRotate
javax.swing.AbstractButton buttonRotate
toolbarButtonGroup
javax.swing.ButtonGroup toolbarButtonGroup
homeAction
DisplayPanel.HomeAction homeAction
defineCenterAction
DisplayPanel.DefineCenterAction defineCenterAction
frontAction
javax.swing.Action frontAction
topAction
javax.swing.Action topAction
bottomAction
javax.swing.Action bottomAction
rightAction
javax.swing.Action rightAction
leftAction
javax.swing.Action leftAction
hydrogensAction
javax.swing.Action hydrogensAction
measurementsAction
javax.swing.Action measurementsAction
perspectiveAction
javax.swing.Action perspectiveAction
axesAction
javax.swing.Action axesAction
boundboxAction
javax.swing.Action boundboxAction
deleteAction
javax.swing.Action deleteAction
zoomAction
javax.swing.Action zoomAction
xlateAction
javax.swing.Action xlateAction
menuListener
javax.swing.event.MenuListener menuListener
timeBegin
long timeBegin
lastMotionEventNumber
int lastMotionEventNumber
useFileExtensionCheckBox
javax.swing.JCheckBox useFileExtensionCheckBox
fileTypeLabel
javax.swing.JLabel fileTypeLabel
fileTypeComboBox
javax.swing.JComboBox fileTypeComboBox
useFileExtension
boolean useFileExtension
choices
java.lang.String[] choices
defaultTypeIndex
int defaultTypeIndex
fileType
java.lang.String fileType
viewer
JmolViewer viewer
container
javax.swing.JPanel container
checkField
javax.swing.JTextField checkField
optsField
javax.swing.JTextField optsField
fileField
javax.swing.JTextField fileField
selectField
javax.swing.JTextField selectField
memBox
javax.swing.JComboBox memBox
methBox
javax.swing.JComboBox methBox
basisBox
javax.swing.JComboBox basisBox
dfBox
javax.swing.JComboBox dfBox
procSpinner
javax.swing.JSpinner procSpinner
chargeSpinner
javax.swing.JSpinner chargeSpinner
multSpinner
javax.swing.JSpinner multSpinner
fileButton
javax.swing.JButton fileButton
saveButton
javax.swing.JButton saveButton
cancelButton
javax.swing.JButton cancelButton
fileChooser
javax.swing.JFileChooser fileChooser
editArea
javax.swing.JTextArea editArea
inputTabs
javax.swing.JTabbedPane inputTabs
check
java.lang.String check
mem
java.lang.String mem
proc
java.lang.String proc
file
java.lang.String file
meth
java.lang.String meth
route
java.lang.String route
charge
java.lang.String charge
mult
java.lang.String mult
select
java.lang.String select
html
javax.swing.JEditorPane html
viewer
JmolViewer viewer
- The data model.
modelAdapter
JmolAdapter modelAdapter
jmolApp
JmolApp jmolApp
display
DisplayPanel display
status
StatusBar status
gaussianDialog
GaussianDialog gaussianDialog
preferencesDialog
PreferencesDialog preferencesDialog
measurementTable
MeasurementTable measurementTable
recentFiles
RecentFilesDialog recentFiles
atomSetChooser
AtomSetChooser atomSetChooser
executeScriptAction
JmolPanel.ExecuteScriptAction executeScriptAction
frame
javax.swing.JFrame frame
guimap
GuiMap guimap
startupWidth
int startupWidth
startupHeight
int startupHeight
pcs
java.beans.PropertyChangeSupport pcs
splash
SplashInterface splash
- Button group for toggle buttons in the toolbar.
consoleframe
javax.swing.JFrame consoleframe
appletContext
java.lang.String appletContext
commands
java.util.Hashtable<K,V> commands
menuItems
java.util.Hashtable<K,V> menuItems
menubar
javax.swing.JMenuBar menubar
toolbar
javax.swing.JToolBar toolbar
exportAction
JmolPanel.ExportAction exportAction
povrayAction
JmolPanel.PovrayAction povrayAction
toWebAction
JmolPanel.ToWebAction toWebAction
writeAction
JmolPanel.WriteAction writeAction
printAction
JmolPanel.PrintAction printAction
copyImageAction
JmolPanel.CopyImageAction copyImageAction
copyScriptAction
JmolPanel.CopyScriptAction copyScriptAction
pasteClipboardAction
JmolPanel.PasteClipboardAction pasteClipboardAction
viewMeasurementTableAction
JmolPanel.ViewMeasurementTableAction viewMeasurementTableAction
qualityJPG
int qualityJPG
qualityPNG
int qualityPNG
imageType
java.lang.String imageType
defaultActions
javax.swing.Action[] defaultActions
- Actions defined by the Jmol class
webExport
WebExport webExport
viewer
JmolViewer viewer
measurementTable
javax.swing.JTable measurementTable
measurementTableModel
MeasurementTable.MeasurementTableModel measurementTableModel
selectedMeasurementRow
int selectedMeasurementRow
deleteButton
javax.swing.JButton deleteButton
deleteAllButton
javax.swing.JButton deleteAllButton
stringClass
java.lang.Class<T> stringClass
povrayPathButton
javax.swing.JButton povrayPathButton
goButton
javax.swing.JButton goButton
saveField
javax.swing.JTextField saveField
savePathLabel
javax.swing.JTextField savePathLabel
outputWidth
int outputWidth
outputHeight
int outputHeight
povrayPathLabel
javax.swing.JTextField povrayPathLabel
runPovCheck
javax.swing.JCheckBox runPovCheck
allFramesCheck
javax.swing.JCheckBox allFramesCheck
antiAliasCheck
javax.swing.JCheckBox antiAliasCheck
displayWhileRenderingCheck
javax.swing.JCheckBox displayWhileRenderingCheck
imageSizeWidth
javax.swing.JLabel imageSizeWidth
imageSizeTextWidth
javax.swing.JFormattedTextField imageSizeTextWidth
imageSizeHeight
javax.swing.JLabel imageSizeHeight
imageSizeTextHeight
javax.swing.JFormattedTextField imageSizeTextHeight
imageSizeRatioBox
javax.swing.JCheckBox imageSizeRatioBox
imageSizeRatioCombo
javax.swing.JComboBox imageSizeRatioCombo
outputFormatCheck
javax.swing.JCheckBox outputFormatCheck
outputFormatCombo
javax.swing.JComboBox outputFormatCombo
outputAlphaCheck
javax.swing.JCheckBox outputAlphaCheck
mosaicPreviewCheck
javax.swing.JCheckBox mosaicPreviewCheck
mosaicPreviewStart
javax.swing.JLabel mosaicPreviewStart
mosaicPreviewComboStart
javax.swing.JComboBox mosaicPreviewComboStart
mosaicPreviewEnd
javax.swing.JLabel mosaicPreviewEnd
mosaicPreviewComboEnd
javax.swing.JComboBox mosaicPreviewComboEnd
outputExtension
java.lang.String outputExtension
outputFileType
java.lang.String outputFileType
autoBond
boolean autoBond
showHydrogens
boolean showHydrogens
showMeasurements
boolean showMeasurements
perspectiveDepth
boolean perspectiveDepth
showAxes
boolean showAxes
showBoundingBox
boolean showBoundingBox
axesOrientationRasmol
boolean axesOrientationRasmol
openFilePreview
boolean openFilePreview
clearConsoleButton
boolean clearConsoleButton
minBondDistance
float minBondDistance
bondTolerance
float bondTolerance
marBond
short marBond
percentVdwAtom
int percentVdwAtom
bButton
javax.swing.JButton bButton
pButton
javax.swing.JButton pButton
tButton
javax.swing.JButton tButton
eButton
javax.swing.JButton eButton
vButton
javax.swing.JButton vButton
abYes
javax.swing.JRadioButton abYes
abNo
javax.swing.JRadioButton abNo
vdwPercentSlider
javax.swing.JSlider vdwPercentSlider
bdSlider
javax.swing.JSlider bdSlider
bwSlider
javax.swing.JSlider bwSlider
btSlider
javax.swing.JSlider btSlider
cH
javax.swing.JCheckBox cH
cM
javax.swing.JCheckBox cM
cbPerspectiveDepth
javax.swing.JCheckBox cbPerspectiveDepth
cbShowAxes
javax.swing.JCheckBox cbShowAxes
cbShowBoundingBox
javax.swing.JCheckBox cbShowBoundingBox
cbAxesOrientationRasmol
javax.swing.JCheckBox cbAxesOrientationRasmol
cbOpenFilePreview
javax.swing.JCheckBox cbOpenFilePreview
cbClearConsoleButton
javax.swing.JCheckBox cbClearConsoleButton
originalSystemProperties
java.util.Properties originalSystemProperties
jmolDefaultProperties
java.util.Properties jmolDefaultProperties
currentProperties
java.util.Properties currentProperties
prefsAction
PreferencesDialog.PrefsAction prefsAction
commands
java.util.Hashtable<K,V> commands
jmol
JmolPanel jmol
viewer
JmolViewer viewer
guimap
GuiMap guimap
checkBoxListener
java.awt.event.ItemListener checkBoxListener
applyButton
javax.swing.JButton applyButton
jmolDefaultsButton
javax.swing.JButton jmolDefaultsButton
rasmolDefaultsButton
javax.swing.JButton rasmolDefaultsButton
cancelButton
javax.swing.JButton cancelButton
okButton
javax.swing.JButton okButton
splashImage
java.awt.Image splashImage
imgWidth
int imgWidth
imgHeight
int imgHeight
status
java.lang.String status
textY
int textY
statusTop
int statusTop
html
javax.swing.JEditorPane html
Package org.openscience.jmol.app.webexport |
serialVersionUID: 1L
OrbopenButton
javax.swing.JButton OrbopenButton
OrbdeleteButton
javax.swing.JButton OrbdeleteButton
CooropenButton
javax.swing.JButton CooropenButton
saveButton
javax.swing.JButton saveButton
Coorfile
javax.swing.JTextField Coorfile
appletPath
javax.swing.JTextField appletPath
fc
javax.swing.JFileChooser fc
OrbList
javax.swing.JList OrbList
RenderMode
javax.swing.JComboBox RenderMode
FormatBox
javax.swing.JComboBox FormatBox
serialVersionUID: 1L
StateButton
javax.swing.JButton StateButton
FileButton
javax.swing.JButton FileButton
PathButton
javax.swing.JButton PathButton
movetoTime
javax.swing.JButton movetoTime
StringtoScriptButton
javax.swing.JButton StringtoScriptButton
appletPath
javax.swing.JTextField appletPath
arrayListHandler
ArrayListTransferHandler arrayListHandler
fc
javax.swing.JFileChooser fc
viewer
Viewer viewer