Package org.jmol.adapter.readers.more

Class Summary
AdfReader A reader for ADF output.
AimsReader FHI-AIMS (http://www.fhi-berlin.mpg.de/aims) geometry.in file format samples of relevant lines in geometry.in file are included as comments below
AlchemyReader TRIPOS simple Alchemy reader.
CastepReader CASTEP (http://www.castep.org) .cell file format relevant section of .cell file are included as comments below
CsfReader CSF file reader based on CIF idea -- fluid property fields.
CubeReader Gaussian cube file format http://www.cup.uni-muenchen.de/oc/zipse/lv18099/orb_MOLDEN.html this is good because it is source code http://ftp.ccl.net/cca/software/SOURCES/C/scarecrow/gcube2plt.c http://www.nersc.gov/nusers/resources/software/apps/chemistry/gaussian/g98/00000430.htm distances are in Bohrs because we are reading Gaussian cube OUTPUT files not Gaussian cube INPUT files.
FFReader  
FoldingXyzReader This reader is for current.xyz files generated by Folding@Home project (see http://folding.stanford.edu) I have not found a precise description of the file format.
GamessReader  
GamessUKReader  
GamessUSReader  
GaussianReader Reader for Gaussian 94/98/03/09 output files.
GaussianWfnReader Reader for Gaussian Wfn files -- not implemented yet
GhemicalMMReader Reads Ghemical ( http://www.uku.fi/~thassine/ghemical) molecular mechanics (*.mm1gp) files.
GromacsReader  
HinReader Support for .hin, HyperChem's native file format.
JaguarReader Jaguar reader tested for the two samples files in CVS.
JmeReader  
MdCrdReader Amber Coordinate File Reader not a stand-alone reader -- must be after COORD keyword in LOAD command
MdTopReader A reader for Amber Molecular Dynamics topology files -- requires subsequent COORD "xxxx.mdcrd" file
Mol2Reader A minimal multi-file reader for TRIPOS SYBYL mol2 files.
MoldenReader A molecular structure and orbital reader for MolDen files.
MopacData  
MopacDataReader  
MopacGraphfReader Reads Mopac 2007 GRAPHF output files
MopacReader Reads Mopac 93, 97 or 2002 output files, but was tested only for Mopac 93 files yet.
MOReader General methods for reading molecular orbital data, including embedded output from the NBO program.
NWChemReader A reader for NWChem 4.6 NWChem is a quantum chemistry program developed at Pacific Northwest National Laboratory.
OdysseyReader  
OdysseyXMLReader  
PqrReader PQR file reader.
PsiReader Reader for Psi3 output files.
QchemReader A reader for Q-Chem 2.1 and 3.2 Q-Chem is a quantum chemistry program developed by Q-Chem, Inc.
ShelxReader A reader for SHELX output (RES) files.
SpartanArchive  
SpartanInputReader  
SpartanReader  
SpartanSmolReader  
V3000Reader A reader for MDL V3000 files
WebMOReader A molecular orbital reader for WebMO files.
Wien2kReader A reader for Wein2k DFT files.