sample	chr	startpos	endpos	nMajor	nMinor
TCGA-DX-A3LS	1	61735	121482979	1	1
TCGA-DX-A3LS	1	144007049	249224388	2	1
TCGA-DX-A3LS	2	12784	243089456	1	1
TCGA-DX-A3LS	3	60345	108451	2	1
TCGA-DX-A3LS	3	115794	237880	5	1
TCGA-DX-A3LS	3	242241	908996	1	0
TCGA-DX-A3LS	3	909038	928324	3	0
TCGA-DX-A3LS	3	928456	988765	1	0
TCGA-DX-A3LS	3	990217	1126930	4	1
TCGA-DX-A3LS	3	1127033	7259684	1	0
TCGA-DX-A3LS	3	7259945	7387400	2	1
TCGA-DX-A3LS	3	7387710	7663168	5	1
TCGA-DX-A3LS	3	7663747	8139779	1	0
TCGA-DX-A3LS	3	8141518	8700126	5	1
TCGA-DX-A3LS	3	8701689	9735597	1	1
TCGA-DX-A3LS	3	9735908	9777288	3	2
TCGA-DX-A3LS	3	9781194	10498239	1	0
TCGA-DX-A3LS	3	10498268	10594207	4	1
TCGA-DX-A3LS	3	10596846	11720788	1	0
TCGA-DX-A3LS	3	11721793	13536565	1	1
TCGA-DX-A3LS	3	13540641	14520164	1	0
TCGA-DX-A3LS	3	14520560	14619250	5	1
TCGA-DX-A3LS	3	14620808	14758610	1	0
TCGA-DX-A3LS	3	14759010	14866566	4	1
TCGA-DX-A3LS	3	14870696	17000294	1	0
TCGA-DX-A3LS	3	17000910	17204119	3	1
TCGA-DX-A3LS	3	17205347	18563469	1	0
TCGA-DX-A3LS	3	18573021	18826846	4	1
TCGA-DX-A3LS	3	18831525	19576302	1	0
TCGA-DX-A3LS	3	19576941	20419679	2	1
TCGA-DX-A3LS	3	20419727	20507853	11	3
TCGA-DX-A3LS	3	20508031	21116889	1	1
TCGA-DX-A3LS	3	21117107	86946756	1	0
TCGA-DX-A3LS	3	86947656	88717661	9	1
TCGA-DX-A3LS	3	88724274	89858337	1	0
TCGA-DX-A3LS	3	89862903	93543202	6	2
TCGA-DX-A3LS	3	93547195	197896118	1	1
TCGA-DX-A3LS	4	12281	53879742	1	1
TCGA-DX-A3LS	4	53880150	117884096	1	0
TCGA-DX-A3LS	4	117885255	118701446	1	1
TCGA-DX-A3LS	4	118701997	126255767	1	0
TCGA-DX-A3LS	4	126267997	127775563	1	1
TCGA-DX-A3LS	4	127776133	129681396	1	0
TCGA-DX-A3LS	4	129682037	130927461	1	1
TCGA-DX-A3LS	4	130929950	136486132	1	0
TCGA-DX-A3LS	4	136489707	138236753	2	1
TCGA-DX-A3LS	4	138237094	138530131	4	1
TCGA-DX-A3LS	4	138532446	146097356	1	1
TCGA-DX-A3LS	4	146099647	147688660	4	1
TCGA-DX-A3LS	4	147692273	149824834	1	1
TCGA-DX-A3LS	4	149826913	154991552	1	0
TCGA-DX-A3LS	4	154991682	161618683	1	1
TCGA-DX-A3LS	4	161618784	163138483	6	1
TCGA-DX-A3LS	4	163138686	164245405	1	1
TCGA-DX-A3LS	4	164250797	191027923	1	0
TCGA-DX-A3LS	5	15532	386772	1	0
TCGA-DX-A3LS	5	403118	2229331	6	1
TCGA-DX-A3LS	5	2229373	4516670	3	1
TCGA-DX-A3LS	5	4517509	5728101	2	1
TCGA-DX-A3LS	5	5729063	7698443	1	0
TCGA-DX-A3LS	5	7701166	8621326	2	1
TCGA-DX-A3LS	5	8621791	9877610	9	1
TCGA-DX-A3LS	5	9883152	11100872	1	1
TCGA-DX-A3LS	5	11101187	11959294	2	1
TCGA-DX-A3LS	5	11961507	12170883	6	1
TCGA-DX-A3LS	5	12181148	18258575	2	1
TCGA-DX-A3LS	5	18258703	20501179	1	1
TCGA-DX-A3LS	5	20503789	21929124	10	1
TCGA-DX-A3LS	5	21929921	22055060	4	1
TCGA-DX-A3LS	5	22055244	159677919	1	1
TCGA-DX-A3LS	5	159678941	161906814	2	1
TCGA-DX-A3LS	5	161909639	180790320	1	1
TCGA-DX-A3LS	6	149661	2447602	1	1
TCGA-DX-A3LS	6	2447699	5589242	2	1
TCGA-DX-A3LS	6	5591866	8293682	1	1
TCGA-DX-A3LS	6	8293737	9542759	2	1
TCGA-DX-A3LS	6	9542938	18162681	1	1
TCGA-DX-A3LS	6	18163822	27942410	1	0
TCGA-DX-A3LS	6	27948088	28795856	5	1
TCGA-DX-A3LS	6	28801383	33497445	1	1
TCGA-DX-A3LS	6	33503018	36395819	3	1
TCGA-DX-A3LS	6	36399565	74468953	1	1
TCGA-DX-A3LS	6	74472995	74610918	11	1
TCGA-DX-A3LS	6	74611197	114845258	1	1
TCGA-DX-A3LS	6	114847007	115764599	13	1
TCGA-DX-A3LS	6	115764732	115884487	5	1
TCGA-DX-A3LS	6	115886188	118093591	1	1
TCGA-DX-A3LS	6	118105216	118145480	9	1
TCGA-DX-A3LS	6	118145822	118219854	4	0
TCGA-DX-A3LS	6	118225714	118329663	10	1
TCGA-DX-A3LS	6	118333033	118642751	19	1
TCGA-DX-A3LS	6	118642926	118701889	8	0
TCGA-DX-A3LS	6	118702624	119339334	14	1
TCGA-DX-A3LS	6	119351993	119386184	3	0
TCGA-DX-A3LS	6	119387156	119674503	19	1
TCGA-DX-A3LS	6	119674904	120274903	5	1
TCGA-DX-A3LS	6	120277773	171051005	1	1
TCGA-DX-A3LS	7	43259	77956975	1	1
TCGA-DX-A3LS	7	77963561	78066441	10	3
TCGA-DX-A3LS	7	78066484	127140082	1	1
TCGA-DX-A3LS	7	127143234	127834916	11	1
TCGA-DX-A3LS	7	127835258	132521876	1	1
TCGA-DX-A3LS	7	132522698	132977337	17	1
TCGA-DX-A3LS	7	132984331	133352318	3	0
TCGA-DX-A3LS	7	133353965	134161747	16	1
TCGA-DX-A3LS	7	134166738	159127004	1	1
TCGA-DX-A3LS	8	31254	3028149	1	0
TCGA-DX-A3LS	8	3029091	3215207	7	1
TCGA-DX-A3LS	8	3215267	31724990	1	0
TCGA-DX-A3LS	8	31727061	32397933	3	1
TCGA-DX-A3LS	8	32398767	32456511	1	0
TCGA-DX-A3LS	8	32458918	32474622	7	1
TCGA-DX-A3LS	8	32475327	32634242	6	1
TCGA-DX-A3LS	8	32635574	36685443	1	0
TCGA-DX-A3LS	8	36686113	36977625	5	1
TCGA-DX-A3LS	8	36981587	37833503	1	1
TCGA-DX-A3LS	8	37834312	37953891	3	0
TCGA-DX-A3LS	8	37956981	37993275	4	0
TCGA-DX-A3LS	8	37996175	38673606	13	1
TCGA-DX-A3LS	8	38681076	38852436	4	1
TCGA-DX-A3LS	8	38852967	43420817	1	0
TCGA-DX-A3LS	8	43420832	99139610	1	1
TCGA-DX-A3LS	8	99140208	99207864	7	2
TCGA-DX-A3LS	8	99208190	146298155	1	1
TCGA-DX-A3LS	9	46587	4082911	1	0
TCGA-DX-A3LS	9	4083297	5047231	5	1
TCGA-DX-A3LS	9	5047247	47217176	1	0
TCGA-DX-A3LS	9	65616971	101235145	1	1
TCGA-DX-A3LS	9	101235500	101678096	1	0
TCGA-DX-A3LS	9	101678273	102331281	4	1
TCGA-DX-A3LS	9	102332047	103333577	7	1
TCGA-DX-A3LS	9	103335508	107740191	4	1
TCGA-DX-A3LS	9	107742266	108338214	3	1
TCGA-DX-A3LS	9	108348889	110660983	1	1
TCGA-DX-A3LS	9	110661235	111028887	2	1
TCGA-DX-A3LS	9	111029467	113141815	1	0
TCGA-DX-A3LS	9	113141959	115440737	2	1
TCGA-DX-A3LS	9	115441438	118154603	1	0
TCGA-DX-A3LS	9	118156520	124133863	2	1
TCGA-DX-A3LS	9	124134998	127283227	1	0
TCGA-DX-A3LS	9	127288697	127609295	3	1
TCGA-DX-A3LS	9	127609876	131970291	1	0
TCGA-DX-A3LS	9	131976508	132837318	1	1
TCGA-DX-A3LS	9	132843428	134400899	1	0
TCGA-DX-A3LS	9	134409607	137116205	2	1
TCGA-DX-A3LS	9	137122410	137631436	1	0
TCGA-DX-A3LS	9	137633543	139134981	3	1
TCGA-DX-A3LS	9	139135228	140366608	1	0
TCGA-DX-A3LS	9	140370923	140765663	4	1
TCGA-DX-A3LS	9	140766968	141091394	2	1
TCGA-DX-A3LS	10	72759	135506704	1	1
TCGA-DX-A3LS	11	198572	22186067	1	0
TCGA-DX-A3LS	11	22187665	25903906	1	1
TCGA-DX-A3LS	11	25904078	41741588	1	0
TCGA-DX-A3LS	11	41742472	134944770	1	1
TCGA-DX-A3LS	12	150442	13211535	3	1
TCGA-DX-A3LS	12	13211716	38923325	2	2
TCGA-DX-A3LS	12	38923904	49945681	1	0
TCGA-DX-A3LS	12	49947287	50068089	10	0
TCGA-DX-A3LS	12	50088020	51601296	1	0
TCGA-DX-A3LS	12	51602829	51664341	8	1
TCGA-DX-A3LS	12	51668186	58000216	1	0
TCGA-DX-A3LS	12	58006345	58021004	25	4
TCGA-DX-A3LS	12	58023981	58374325	19	3
TCGA-DX-A3LS	12	58374946	58737269	9	1
TCGA-DX-A3LS	12	58739416	58843459	1	0
TCGA-DX-A3LS	12	58843858	58856156	13	2
TCGA-DX-A3LS	12	58862091	60246941	1	0
TCGA-DX-A3LS	12	60247486	60960680	25	1
TCGA-DX-A3LS	12	60961029	60961029	5	4
TCGA-DX-A3LS	12	60962650	60976651	18	0
TCGA-DX-A3LS	12	60978919	61498390	1	1
TCGA-DX-A3LS	12	61498477	61546256	12	3
TCGA-DX-A3LS	12	61547399	61643932	1	0
TCGA-DX-A3LS	12	61649350	61971143	14	1
TCGA-DX-A3LS	12	61971186	61999786	6	6
TCGA-DX-A3LS	12	62006001	67817221	1	0
TCGA-DX-A3LS	12	67818327	67963239	18	2
TCGA-DX-A3LS	12	67969929	69075786	1	0
TCGA-DX-A3LS	12	69082596	69210887	46	3
TCGA-DX-A3LS	12	69210917	69514447	31	1
TCGA-DX-A3LS	12	69514968	69787707	1	0
TCGA-DX-A3LS	12	69794086	70277306	21	1
TCGA-DX-A3LS	12	70277883	71590124	1	0
TCGA-DX-A3LS	12	71590766	71880663	30	0
TCGA-DX-A3LS	12	71884393	72388839	5	1
TCGA-DX-A3LS	12	72389202	72735501	11	1
TCGA-DX-A3LS	12	72738669	73091930	2	0
TCGA-DX-A3LS	12	73095154	73763154	15	1
TCGA-DX-A3LS	12	73763389	73773107	8	4
TCGA-DX-A3LS	12	73778216	74821094	1	0
TCGA-DX-A3LS	12	74823813	75732832	23	0
TCGA-DX-A3LS	12	75735144	79052952	1	0
TCGA-DX-A3LS	12	79055145	79564183	22	2
TCGA-DX-A3LS	12	79566981	82137459	1	0
TCGA-DX-A3LS	12	82141137	82607765	16	1
TCGA-DX-A3LS	12	82613281	84899170	1	0
TCGA-DX-A3LS	12	84899974	85637310	17	0
TCGA-DX-A3LS	12	85639251	86376577	2	0
TCGA-DX-A3LS	12	86378863	86548197	7	1
TCGA-DX-A3LS	12	86549655	86969070	3	0
TCGA-DX-A3LS	12	86971993	87101230	16	3
TCGA-DX-A3LS	12	87104318	87375333	23	1
TCGA-DX-A3LS	12	87376537	87392547	16	8
TCGA-DX-A3LS	12	87394122	89093706	1	0
TCGA-DX-A3LS	12	89102902	89178133	7	1
TCGA-DX-A3LS	12	89178669	89210737	1	0
TCGA-DX-A3LS	12	89212166	89345231	10	2
TCGA-DX-A3LS	12	89345489	89488629	5	0
TCGA-DX-A3LS	12	89489156	89604742	34	3
TCGA-DX-A3LS	12	89606061	89945359	6	1
TCGA-DX-A3LS	12	89946184	90290007	17	1
TCGA-DX-A3LS	12	90290854	90360063	22	1
TCGA-DX-A3LS	12	90362052	90592244	7	0
TCGA-DX-A3LS	12	90592819	90643524	12	0
TCGA-DX-A3LS	12	90643599	90816368	3	1
TCGA-DX-A3LS	12	90819799	91166369	20	1
TCGA-DX-A3LS	12	91166516	91651044	8	1
TCGA-DX-A3LS	12	91658030	95217855	1	0
TCGA-DX-A3LS	12	95218144	95249995	6	1
TCGA-DX-A3LS	12	95252088	95260442	5	1
TCGA-DX-A3LS	12	95261568	95532366	1	1
TCGA-DX-A3LS	12	95534425	96402185	4	1
TCGA-DX-A3LS	12	96403199	96763795	19	2
TCGA-DX-A3LS	12	96768092	99433221	1	0
TCGA-DX-A3LS	12	99433290	99487219	11	2
TCGA-DX-A3LS	12	99487502	101909251	1	0
TCGA-DX-A3LS	12	101911355	102635521	32	5
TCGA-DX-A3LS	12	102653911	105570890	1	0
TCGA-DX-A3LS	12	105572064	106197595	21	0
TCGA-DX-A3LS	12	106197930	106468753	8	1
TCGA-DX-A3LS	12	106471671	107071561	2	1
TCGA-DX-A3LS	12	107071637	107150703	6	1
TCGA-DX-A3LS	12	107151600	109493007	1	0
TCGA-DX-A3LS	12	109493896	109670468	5	1
TCGA-DX-A3LS	12	109673009	119485358	1	0
TCGA-DX-A3LS	12	119488042	119632347	19	1
TCGA-DX-A3LS	12	119632713	121737088	1	0
TCGA-DX-A3LS	12	121737582	122494845	18	1
TCGA-DX-A3LS	12	122496737	122888594	6	0
TCGA-DX-A3LS	12	122899355	123609296	1	0
TCGA-DX-A3LS	12	123611248	124445075	23	1
TCGA-DX-A3LS	12	124447841	125459268	1	0
TCGA-DX-A3LS	12	125459817	126029755	6	1
TCGA-DX-A3LS	12	126030139	133778189	1	0
TCGA-DX-A3LS	13	19026949	115108397	1	0
TCGA-DX-A3LS	14	19002124	107285437	1	1
TCGA-DX-A3LS	15	20016328	102469040	1	0
TCGA-DX-A3LS	16	60777	90287535	1	1
TCGA-DX-A3LS	17	526	81049726	1	1
TCGA-DX-A3LS	18	48133	78015057	1	1
TCGA-DX-A3LS	19	90910	38854099	1	1
TCGA-DX-A3LS	19	38857008	39239177	6	3
TCGA-DX-A3LS	19	39244081	59097854	1	1
TCGA-DX-A3LS	20	61305	29441595	1	0
TCGA-DX-A3LS	20	29443421	29533682	3	1
TCGA-DX-A3LS	20	29533697	29651749	2	1
TCGA-DX-A3LS	20	29835049	30370892	6	1
TCGA-DX-A3LS	20	30373242	30695145	3	1
TCGA-DX-A3LS	20	30703929	33343157	1	1
TCGA-DX-A3LS	20	33359328	37728552	5	1
TCGA-DX-A3LS	20	37729022	40551875	7	1
TCGA-DX-A3LS	20	40553789	41535977	2	1
TCGA-DX-A3LS	20	41538183	42258743	5	1
TCGA-DX-A3LS	20	42262457	42853049	8	1
TCGA-DX-A3LS	20	42855092	45989730	1	0
TCGA-DX-A3LS	20	45990319	47465681	1	1
TCGA-DX-A3LS	20	47468814	50911944	1	0
TCGA-DX-A3LS	20	50916922	51169849	2	1
TCGA-DX-A3LS	20	51175143	51412395	7	1
TCGA-DX-A3LS	20	51412530	54119575	1	0
TCGA-DX-A3LS	20	54119926	54177481	3	2
TCGA-DX-A3LS	20	54181862	55014924	1	0
TCGA-DX-A3LS	20	55015166	57872885	3	1
TCGA-DX-A3LS	20	57878080	62956153	1	0
TCGA-DX-A3LS	21	10736871	48096957	1	1
TCGA-DX-A3LS	22	16052528	23961639	1	0
TCGA-DX-A3LS	22	23970430	24045235	8	2
TCGA-DX-A3LS	22	24046638	33158093	1	0
TCGA-DX-A3LS	22	33159636	34483216	1	1
TCGA-DX-A3LS	22	34484130	38048034	1	0
TCGA-DX-A3LS	22	38055833	46745633	1	1
TCGA-DX-A3LS	22	46748310	51234455	1	0
TCGA-DX-A3LS	X	168477	23776657	1	1
TCGA-DX-A3LS	X	23780626	24779086	2	1
TCGA-DX-A3LS	X	24779547	83816610	1	1
TCGA-DX-A3LS	X	83817105	84530317	3	1
TCGA-DX-A3LS	X	84531746	100260526	1	1
TCGA-DX-A3LS	X	100261301	100842238	3	1
TCGA-DX-A3LS	X	100842911	155233846	1	1
