SetNmAndUqTags (picard 3.5.0 API)

java.lang.Object

picard.cmdline.CommandLineProgram

picard.sam.SetNmMdAndUqTags

picard.sam.SetNmAndUqTags

@Deprecated @DocumentedFeature public class SetNmAndUqTags extends SetNmMdAndUqTags

Deprecated.

This tool is deprecated and SetNmMdAndUqTags should be used instead.

Field Summary

Fields inherited from class SetNmMdAndUqTags
INPUT, IS_BISULFITE_SEQUENCE, OUTPUT, SET_ONLY_UQ

Fields inherited from class CommandLineProgram
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, MAX_ALLOWABLE_ONE_LINE_SUMMARY_LENGTH, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, referenceSequence, specialArgumentsCollection, SYNTAX_TRANSITION_URL, TMP_DIR, USE_JDK_DEFLATER, USE_JDK_INFLATER, VALIDATION_STRINGENCY, VERBOSITY
Constructor Summary

Constructors

Constructor

Description

SetNmAndUqTags()

Deprecated.
Method Summary

Methods inherited from class SetNmMdAndUqTags
doWork, requiresReference

Methods inherited from class CommandLineProgram
checkRInstallation, customCommandLineValidation, getCommandLine, getCommandLineParser, getCommandLineParserForArgs, getDefaultHeaders, getFaqLink, getMetricsFile, getPGRecord, getStandardUsagePreamble, getStandardUsagePreamble, getVersion, hasWebDocumentation, instanceMain, instanceMainWithExit, makeReferenceArgumentCollection, parseArgs, setDefaultHeaders, useLegacyParser

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SetNmAndUqTags
  
  public SetNmAndUqTags()
  
  Deprecated.