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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.MapFileReader
abstract class MapFileReader
Field Summary | |
---|---|
protected float |
a
|
protected javax.vecmath.Point3f |
adjustment
|
protected float |
alpha
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protected float |
b
|
protected float |
beta
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protected float |
c
|
protected float |
gamma
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protected int |
mapc
|
protected int |
mapr
|
protected int |
maps
|
protected int |
mode
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protected int |
na
|
protected int |
nb
|
protected int |
nc
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protected int |
nx
|
protected int[] |
nxyzStart
|
protected int |
ny
|
protected int |
nz
|
protected javax.vecmath.Point3f |
origin
|
protected javax.vecmath.Point3f[] |
vectors
|
Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, canDownsample, downsampleRemainders, endOfData, isAngstroms, negativeAtomCount |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next |
Constructor Summary | |
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MapFileReader(SurfaceGenerator sg,
java.io.BufferedReader br)
|
Method Summary | |
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protected void |
getVectorsAndOrigin()
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protected abstract void |
readParameters()
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protected int |
readVolumetricHeader()
|
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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getNextVoxelValue, getVoxelBitSet, gotoData, nextVoxel, readAtomCountAndOrigin, readExtraLine, readSurfaceData, readTitleLines, readVolumeData, readVolumeParameters, readVoxelVector, skipComments, skipData |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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determineFileType, discardTempData, getTokens, parseFloat, parseFloat, parseInt, parseInt, parseIntNext, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected int mapc
protected int mapr
protected int maps
protected int nx
protected int ny
protected int nz
protected int mode
protected int[] nxyzStart
protected int na
protected int nb
protected int nc
protected float a
protected float b
protected float c
protected float alpha
protected float beta
protected float gamma
protected javax.vecmath.Point3f origin
protected javax.vecmath.Point3f adjustment
protected javax.vecmath.Point3f[] vectors
Constructor Detail |
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MapFileReader(SurfaceGenerator sg, java.io.BufferedReader br)
Method Detail |
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protected abstract void readParameters() throws java.lang.Exception
java.lang.Exception
protected int readVolumetricHeader()
readVolumetricHeader
in class VolumeFileReader
protected void getVectorsAndOrigin()
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