Class GenotypeConcordance.Alleles

java.lang.Object
picard.vcf.GenotypeConcordance.Alleles
Enclosing class:
GenotypeConcordance
protected static class GenotypeConcordance.Alleles extends Object
A simple structure to return the results of getAlleles. NB: truthAllele1/2 and callAllele1/2 may be null if no first or second allele was present respectively.

  • Field Details

    • allAlleles

      public final picard.vcf.OrderedSet<String> allAlleles

    • truthAllele1

      public final String truthAllele1

    • truthAllele2

      public final String truthAllele2

    • callAllele1

      public final String callAllele1

    • callAllele2

      public final String callAllele2

  • Constructor Details

    • Alleles

      public Alleles(picard.vcf.OrderedSet<String> allAlleles, String truthAllele1, String truthAllele2, String callAllele1, String callAllele2)

  • Method Details

    • asList

      public List<htsjdk.variant.variantcontext.Allele> asList()

    • truthAlleles

      public List<htsjdk.variant.variantcontext.Allele> truthAlleles()

    • callAlleles

      public List<htsjdk.variant.variantcontext.Allele> callAlleles()